Design of CRISPR constructs
Design Evaluation MultiCRISP CLD GenomeCRISPR Help Links

Sequence alignment & homology peak detection

Check out our new CRISPR Library Designer (CLD): batch design of sgRNA libraries
Download the dockerized version now at CLD on Git\ hub
Select organism:

1. Enter sequences to align

Input is GeneSymbol
Input is FASTA sequence

FASTA example | GeneSymbol example | Clear [HELP]

2. Set up Peak detection parameters
Sequence length to look for: bp
Enable dynamic peak tracking
(faster, but less accurate, suitable when aligning large sequences)
Merge overlapping homology peaks
(directly consecutive peaks will always be merged)

3. Start the aligning process:

Boutros lab, E-CRISP-Version 5.4
For suggestions please contact us at crispr@dkfz.de